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Low Carb Stuffed Peppers in Crockpot: with Harissa

Low Carb Stuffed Peppers in Crockpot: with Harissa
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Stuffed bell peppers have been a wildly popular dish for ages. Recipes have stuffed these colorful gems with a huge range of different ingredients, and they have been cooked under every technique imaginable. This recipe is a low carb version of stuffed peppers enhanced with a savory chutney and a spicy harissa. I’ve cooked them in the slow cooker to fully meld and infuse all of the robust flavors together in the way only low and slow cooking can do.

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Bell peppers stuffed with pork and chutney
Bell peppers stuffed with pork and chutney

Using Chutneys to Boost Flavor

Chutneys are often found either in Indian dishes or as a spread on cheese trays. Chutney can often add a savory note to a variety of dishes, giving each dish a more complex flavor profile, and enhancing those comfort foods we gravitate toward in the cold weather.

A few cold-weather examples where chutneys would boost flavor would include meat pies, chili, or savory squash dishes. Chutneys could be used to enhance the flavor of quinoa or grains. Any time of the year, chutneys make a wonderful low carb spread to include on cheese trays, and this post can help with ideas specific to cheese plates or grazing tables.

Tips for cooking stuffed peppers in the Crockpot

While there are recipes for low carb stuffed peppers made in the microwave, the oven, or the instapot, I found that the chutney and harissa flavors of this recipe infused more thoroughly into the stuffing under low and slow cooking (i.e., the crockpot). I made this dish three times before I could achieve the result I was looking for, and I’ve included a video in the recipe that gives you tips on what I learned through these tests.

Here are a few of those tips specific to cooking in the crockpot:

  • Most importantly, use a sharp knife or a toothpick to poke some holes in the bottom of the peppers so that some of the water from the fleshy parts of the peppers will drain into the crockpot rather than onto your plate when served;
  • Fill the peppers fully and all the way to the edges. The stuffing will shrink a bit from the sides as it cooks;
  • I tried cutting the peppers length-wise (basically halved) rather than standing up with just their tops cut off. While it makes a more visually appealing dish with the peppers cut lengthwise, you can’t fit as many in the crockpot and you end up with too much stuffing leftover.

Reliable Substitutions for Ingredients used in Stuffed Peppers

Stuffed peppers are very easy to modify to a specific diet or palate, and still end up with a successful, tasty dish. Modifications can take this dish from low carb to carb-rich, from protein-centrist to vegetarian, from Mexican to Indian, etc. Here are my favorite substitutions:

  • For the protein: Good substitutions for the ground pork might include ground beef, ground turkey, or beans if you are plant based
  • For the vegetables: I used squash, mushrooms and onions but you could easily use cauliflower rice, zucchini noodles or grains like quinoa or rice if you don’t want to be low-carb compliant
  • For the chutney: I used a red pepper and apple chutney but any of the chutneys with late summer or Fall fruit would work. A plum chutney or a cranberry chutney would be wonderful.
  • For the spice: If you purchase harissa paste, know that they vary quite a bit in the degree of heat. Some are extremely hot. A number of Mexican spice blends (smoked chipotle, enchilada blends, etc.) would work well. Curry paste would also be a good option.
  • For the picante sauce: It would be easy to substitute salsa or tomato puree for the picante sauce.
Individual ingredients to be used in stuffing laid out in a bowl
Ingredients for low carb stuffed peppers
Red bell eppers in crock pot ready for stuffing
Red bell peppers in crock pot ready for stuffing

Low Carb Crockpot Stuffed Peppers Layered with Chutney & Harissa

Bell peppers stuffed with pork and chutney
5 from 3 votes
Prep Time 20 minutes
Cook Time 4 hours
Servings 4
Calories 711


  • ½ cup Picante Sauce or salsa of your choice
  • ¼ cup Harissa paste
  • 1 onion chopped
  • 1 lb ground pork sausage or ground beef or ground turkey
  • 1 cup cauliflower rice alternatively use cooked butternut squash
  • ¾ cup chopped mushrooms
  • 3 garlic cloves minced
  • ½ tsp smoked paprika
  • 1 ½ tsp salt
  • ½ tsp. pepper to taste
  • 4-5 bell peppers
  • 4 Tbsp. Chutney
  • 1 ¼ cup shredded Gouda cheese or your favorite melting cheese
  • sour cream and green onion optional, for toppings


  • In a medium sized bowl, stir together the Picante sauce, the harissa and the chopped onions.  Microwave for 3-5 minutes to soften onions (don't saute onions, as that is too much grease or oil to add to peppers).
    1/2 cup Picante Sauce, 1/4 cup Harissa paste, 1 onion
  • In large bowl, mix together uncooked ground pork, cauliflower rice, mushrooms, minced garlic, 1/2 tsp paprika, 1 1/2 tsp salt and 1/2 tsp pepper. Stir in the onion/picante/harissa mix.
    1 lb ground pork sausage, 1 cup cauliflower rice, 3/4 cup chopped mushrooms, 3 garlic cloves, 1/2 tsp smoked paprika, 1 1/2 tsp salt, 1/2 tsp. pepper
  • Cut the tops off of the peppers and remove seeds, stem and membranes.  With a sharp paring knife or smaller knife, pierce the bottom of each pepper with about 4-5 small holes so that the water from the pepper membranes will drain into the crockpot rather than onto your plate upon serving.
    4-5 bell peppers
  • Place pepper shells in slow cooker/crockpot and fill peppers almost to the top with stuffing mixture. Make sure and fill fully to the sides of the peppers, as the stuffing will shrink a bit upon cooking. Then place 1 Tbsp chutney on top of mixture and sprinkle some of the shredded cheese on top.
    4 Tbsp. Chutney, 1 1/4 cup shredded Gouda cheese
  • Turn crockpot on low and cook for about 4 hours. Garnish with sour cream and minced green onions.
    sour cream and green onion


Low carb stuffed peppers enhanced with chutney and harissa - slow cooker method
Watch this video on YouTube.
Watch the Step by Step Video for More Details


Calories: 711kcalCarbohydrates: 23gProtein: 40gFat: 51gSaturated Fat: 23gCholesterol: 166mgSodium: 2679mgPotassium: 1075mgFiber: 7gSugar: 13gVitamin A: 4622IUVitamin C: 178mgCalcium: 568mgIron: 3mg
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Bobotie: A South African Meat Pie Using Chutney | Farm to Jar Food

Sunday 9th of December 2012

[...] foray into using chutneys in main dishes for enhanced flavor.  Earlier I posted a recipe for crock pot stuffed peppers with quinoa and chutney that was really successful on our family table.  Do you have any favorite [...]

dorothy stainbrook

Friday 19th of October 2012

Ah-h, that sounds good with acorn squash Cyndy! The first trial of these I put squash inside of the peppers along with everything else, but the squash flavor got lost with all the other strong flavors. I like your idea of using squash as both the stuffer and the stuffing. Let me know how it turns out!

Cyndy Crist

Friday 19th of October 2012

My husband isn't a fan of bell peppers, but I'm thinking this stuffing might be really good in squash. Since squash are happily also plentiful at this time of year, I think I'll try that. I'm thinking acorn squash would work well, and I might even use ground pork instead of ground beef just because I already have some in the freezer and since cranberry is always good with pork. Now, that makes me think about using ground turkey; hmm... Thanks for stimulating some new ideas!

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